Voxels Resampling: change the voxel size of a volume

Change the voxel size of a CT volume, for example to make the voxels cubical

2 min read
In the app
  • CTVoxels Resampling

Voxels Resampling rebuilds a voxel volume with a new voxel size; its tooltip reads "Resample voxels to fit the given scale." The volume keeps its physical size: only the number of voxels changes. Use it to:

  • Make the voxels cubical. In many CT scans the distance between slices is larger than the pixel size within a slice, so the voxels are not cubes.
  • Make a large volume lighter. A voxel twice as large along each axis gives eight times fewer voxels, so the volume needs less memory and tools such as Voxels to Mesh work faster.

Resample a Volume

  1. Select one voxel volume in the Scene tree. The tool works with exactly one volume.
  2. Click CT › Voxels Resampling.
  3. Enter the new voxel size in the New field(s).
  4. Click Apply. The panel closes.

Voxels Resampling on a voxel volume made from the fandisk part with Mesh to Voxels: Old voxel size 0.04 mm, New 0.08 mm, Make cubical voxels on; Information shows Voxels Dims 127, 137, 73

The same volume after Apply: Voxel Size 0.08 mm and Voxels Dims 62, 68, 36, so about eight times fewer voxels

Control What it does Default
Voxel Size XYZ, Old The current voxel size along X, Y and Z (read-only) —
New The new voxel size in scene units: one field for all axes when Make cubical voxels is on, three fields (X, Y, Z) when it is off The current size
Make cubical voxels Use the same voxel size along X, Y and Z On if the current voxels are cubes, otherwise off

Apply is unavailable while the new size equals the old one; its tooltip then says "New voxel size is same as old one." The new size can range from 0.1% of the diagonal of the volume to its smallest side.

The Voxels Resampling panel with Make cubical voxels on: one New field of 2 mm replaces the old voxel size of 0.826 × 0.826 × 1.5 mm

Result

The selected volume changes in place; no copy is made. The Voxel Size and Voxels Dims in the Information panel show the new values, and the iso-surface is rebuilt.

  • A larger voxel keeps the overall shape but loses details smaller than the new voxel.
  • A smaller voxel gives more voxels, but their values are interpolated from the original ones: it adds no new detail.

To return to the original volume, press Ctrl+Z (Cmd+Z on macOS).

To cut a large scan down to the region you need instead, use Set Active Voxel Box.

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